1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAATTTCTACTCATGTAGATGCTGCGCCTCCTGATGCAGCCTCAAATACTAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttgattgttagagccttggaatcatctaatttatatgattttcattattcaagcatgacttgaaattatatggtgtaaatacaatgcgtaaagg...
species | Oryza sativa |
transcript | LOC_Os01g14932.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATG CATGTTGTTCACATAACGATGGTACAAAAGAGAGGGAGCCAAGATTGCCATEST: gi|29665064|gb|CB661339.1|CB661339
genomic: CTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttga ... gttttaccagCATGTTGTTCACATAAC-ATGGTACAAAAGAGAGGGAGCCAAGATTGCCAT
EST: TAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATG CATGTTGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCATTEST: gi|58663487|gb|CK052173.1|CK052173
genomic: TAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttga ... gttttaccagCATGTTGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCATT
EST: TAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATG CATGTTGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCATTEST: gi|29619779|gb|CB624791.1|CB624791
genomic: TAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttga ... gttttaccagCATGTTGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCATT
EST: CTGGATTAGTACACCCTCCAGGATCTCCTCACAATG CATGTGTGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCAT
genomic: CTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttga ... gttttaccagCATGT-TGTTCACATAACATGGTACAAAAGAGAGGGAGCCAAGATTGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTTCTACTCATGTAGATGCTGCGCCTCCTGATGCAGCCTCAAATACTAGTGCAGCTCCTTCTGGATTAGTACAACCTCCAGTATCTCCTCACAATGgtatgtttgattgttagagccttggaatcatctaatttatatgattttcattattcaagcatgacttgaaattatatggtgtaaatacaatgcgtaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC