1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcttctgttataccctatgcaggaaaactttggaattttgagctccttcatatttaatcatttactcacatcctaatctaaagaaatgttctttttcttggttacttgtagAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCAAGACATAAGGATGTAACCAGAAAGAAACTCCAATCAAGCTCCAATCGGC
species | Oryza sativa |
transcript | LOC_Os01g12900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCTCCAAGACACAGAGA AACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCEST: gi|33693104|gb|CF321343.1|CF321343
genomic: AGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCTCCAAGACACAGAGAgtatgcttct ... ttacttgtagAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTC
EST: AGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCTCCAAGACACAGAGA AACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCA
genomic: AGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCTCCAAGACACAGAGAgtatgcttct ... ttacttgtagAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCA
atcatttactcacatcctaatctaaagaaatgttctttttcttggttacttgtagAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCAAGACATAAGGATGTAACCAGAAAGAAACTCCAATCAAGCTCCAATCGGC
ttctttttcttggtt CT-rich tract
taatctaaagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttctgttataccctatgcaggaaaactttggaattttgagctccttcatatttaatcatttactcacatcctaatctaaagaaatgttctttttcttggttacttgtagAACATTAAAGCTGTTTTCGACACTGCCATCAAAGTGGTGCTTCAACCTCCAAGACATAAGGATGTAACCAGAAAGAAACTCCAATCAAGCTCCAATCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT