1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaagctagctcaagctcaccctcaatctcaatctcaagctggggcttgcaaatcttgttctcctctttgattttattttctcaagtgttgctgctcacttgtgctcagctcagagaaagatctgatttagtgattttgattctcgttttggttggggactgttggttgcag
species | Oryza sativa |
transcript | LOC_Os01g12900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|7134839|gb|AU082699.1|AU082699
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|88396989|gb|CI578138.1|CI578138
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTAGAGGAGGTTGAGGGCTCTGAGGCTAGAGGGGAGCCGATEST: gi|38478868|gb|CF963001.1|CF963001
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAG-CTACAGGGGAGCCGAT
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|33693104|gb|CF321343.1|CF321343
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|88740975|gb|CI764483.1|CI764483
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|88313328|gb|CI594958.1|CI594958
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|218486326|gb|FG948103.1|FG948103
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|38482617|gb|CF966571.1|CF966571
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGGCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|55439594|gb|CV733107.1|CV733107
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGEST: gi|427824|gb|D23963.1|D23963
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
EST: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGACTATGGGACACTGCAG GTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
genomic: TGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaag ... ttggttgcagGTCAGGAGGATTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAGgtggggaaagctagctcaagctcaccctcaatctcaatctcaagctggggcttgcaaatcttgttctcctctttgattttattttctcaagtgttgctgctcacttgtgctcagctcagagaaagatctgatttagtgattttgattctcgttttggttggggactgttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG