1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaaagcccatttacatgtacaccacattgcatcatgctttgtctcattacctttagaatctctaaagtgtgtactaatgacctgacttcatctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGG
species | Oryza sativa |
transcript | LOC_Os01g12900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCCTTCTCCCTGATAAGCAGGGCGA-CTATGAGAATGTTCAGAAGAAG TGGATGCCAGA-CTTTCGCCGGTTTTCGCCTGGTGTNC-TGTA-TTCTTNTEST: gi|38478868|gb|CF963001.1|CF963001
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTT-CGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTEST: gi|33693104|gb|CF321343.1|CF321343
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTEST: gi|218486326|gb|FG948103.1|FG948103
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTEST: gi|38482617|gb|CF966571.1|CF966571
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTEST: gi|55439594|gb|CV733107.1|CV733107
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
cattacctttagaatctctaaagtgtgtactaatgacctgacttcatctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGG
cttcatct CT-rich tract
tttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaagcccatttacatgtacaccacattgcatcatgctttgtctcattacctttagaatctctaaagtgtgtactaatgacctgacttcatctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGG
- - - - - - - catgtac
- - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgact