1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCTCCGTGAAGATAGGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttttgactgtgacaagagaatgacacatttttgccacatttaggttagccaggtttcacatttttaggtcacagtttggttcatgccaaagtt...
species | Oryza sativa |
transcript | LOC_Os01g12900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAATGGAGCAG GGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCEST: gi|33693104|gb|CF321343.1|CF321343
genomic: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttt ... tacatgttagGGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGC
EST: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAG GGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCEST: gi|218486326|gb|FG948103.1|FG948103
genomic: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttt ... tacatgttagGGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGC
EST: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAATGGAGCAG GGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGCEST: gi|55439594|gb|CV733107.1|CV733107
genomic: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttt ... tacatgttagGGAGAAGAACTGAGGAAGCTAATAGGAGCGGTCGCCTACATCGAATGCAGC
EST: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAG GGAGAAGAACTGAGGAAGCTAATAGGA
genomic: GGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttt ... tacatgttagGGAGAAGAACTGAGGAAGCTAATAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCGTGAAGATAGGGCCTATCTTGCTGATCATCCAGCTTCTTCCATAATAACAACGGAGCAGgttggtgttttgactgtgacaagagaatgacacatttttgccacatttaggttagccaggtttcacatttttaggtcacagtttggttcatgccaaagtt
- - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG