1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaactgtgtcgttccttttccattgctctttctgaaaagtggctcttctgaatatttctctgcatcattatttttgtggatatagtgaagatagt...
species | Oryza sativa |
transcript | LOC_Os01g12260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACATTGGATGCTAGACTAGAANGTGGTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTTCNTTGGGCAAGTAACTGCTTNAACCGATTCATAAAEST: gi|88260730|gb|CI363023.1|CI363023
genomic: TACATTGGATGCTAGACTAGAG-GTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTT-C-TTGGGCAGGTAGCTGCTTGA-CCGATTCATAAA
EST: GATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACEST: gi|88382536|gb|CI535744.1|CI535744
genomic: GATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
EST: ATACATTGGATGCTAGACTAGAGGTGNTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACEST: gi|88459628|gb|CI521888.1|CI521888
genomic: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
EST: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACEST: gi|58657313|gb|CK045993.1|CK045993
genomic: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
EST: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACEST: gi|88320277|gb|CI520821.1|CI520821
genomic: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
EST: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACEST: gi|27547601|gb|CA765590.2|CA765590
genomic: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
EST: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAGGAAGCTACCAGAG ATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
genomic: ATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaact ... ctttttacagATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGgtatgtaactgtgtcgttccttttccattgctctttctgaaaagtggctcttctgaatatttctctgcatcattatttttgtggatatagtgaagatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC