1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGgtaatgatttcaatctttgctatcgcaagccactccttgccaattttccatacttctgcagtcatcacattttttgtttcaatactaccctaacatggac...
species | Oryza sativa |
transcript | LOC_Os01g12260.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTG CTCTGGTGGAGTTGTGCTAGCTTNCCGAGATGGNAAGATAAGTCTGTGAAAEST: gi|88459628|gb|CI521888.1|CI521888
genomic: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGgtaatgattt ... ttttatttagCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATA-GTCTGTGAAA
EST: GCACATGGACCCTCCTG CTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAAEST: gi|58657313|gb|CK045993.1|CK045993
genomic: GCACATGGACCCTCCTGgtaatgattt ... ttttatttagCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAA
EST: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTG CTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAGGGATAGTCTGTGAAAAEST: gi|27547601|gb|CA765590.2|CA765590
genomic: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGgtaatgattt ... ttttatttagCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAA
EST: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTG CTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAA
genomic: GTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGgtaatgattt ... ttttatttagCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGgtaatgatttcaatctttgctatcgcaagccactccttgccaattttccatacttctgcagtcatcacattttttgtttcaatactaccctaacatggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactcc