1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctccacatgaactactactctgttgacttccgtctagtaacttttctgttggataactgggatacctttccatgggttaatgggaactaaaacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAA
species | Oryza sativa |
transcript | LOC_Os01g12260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG GAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCEST: gi|7404230|gb|D40089.2|D40089
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtatctatca ... aacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATC
EST: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG GAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCEST: gi|88399071|gb|CI603738.1|CI603738
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtatctatca ... aacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATC
EST: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAG GAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATC
genomic: GCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGgtatctatca ... aacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATC
ctgttggataactgggatacctttccatgggttaatgggaactaaaacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAA
aactaaa putative branch site (score: 9)
cttctc CT-rich tract
aactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccacatgaactactactctgttgacttccgtctagtaacttttctgttggataactgggatacctttccatgggttaatgggaactaaaacttctcagGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -catgaac
- - - - - - - - - -ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa