1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATgtaaacttcttattcctgtttgtactgttctttattaagaaagtccatttaccttttgtgattctgcacattggaaaataccaagttattcatcaaaaaa...
species | Oryza sativa |
transcript | LOC_Os01g12260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAAT TGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAEST: gi|7404230|gb|D40089.2|D40089
genomic: AGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATgtaaacttct ... ttttgtgtagTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCA
EST: AGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAAT TGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAEST: gi|88399071|gb|CI603738.1|CI603738
genomic: AGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATgtaaacttct ... ttttgtgtagTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCA
EST: AGGTTGGAATTTGAACGGAACGAGAAGCACGGTGATATCAAGAAGAAAAT TGAATACTCAAAGCAGCTCAATGCTTCC-GACTTGAAGTTCTGCAAGCTCA
genomic: AGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATgtaaacttct ... ttttgtgtagTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATgtaaacttcttattcctgtttgtactgttctttattaagaaagtccatttaccttttgtgattctgcacattggaaaataccaagttattcatcaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA