1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtcctctgtttctcgtttattcatcaaccatcataagaattactatataaacaatatctaatcttaagtttctctatatttgttctattttccactttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCTGACTTCTCTCA
species | Oryza sativa |
transcript | LOC_Os01g05420.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|29662253|gb|CB658528.1|CB658528
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|29679612|gb|CB675887.1|CB675887
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|29670426|gb|CB666701.1|CB666701
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|66923574|gb|CX110422.1|CX110422
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|2797946|gb|AA751240.1|AA751240
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|29665319|gb|CB661594.1|CB661594
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCEST: gi|27577848|gb|CB000543.1|CB000543
genomic: AGGAGATATGATGATGAAAGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
EST: AGAGCTCCTTACAGGCGACCACAAATGAAGAA GCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
genomic: AGAGCTCCTTACAGGCGACCACAAATGAAGAAgtgagtcctc ... tttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGC
acaatatctaatcttaagtttctctatatttgttctattttccactttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCTGACTTCTCTCA
ttctattttccacttt CT-rich tract
tatatttgttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcctctgtttctcgtttattcatcaaccatcataagaattactatataaacaatatctaatcttaagtttctctatatttgttctattttccactttgatgtagGCCTTCATCAAGTAGTTCTGGAATGGAATCCAGGGACGATGATCTTGATGCTGACTTCTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG