1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGTCTCCTTCCTCGTCATCTCCAAGTTCACCAGCTCCCCCTCCTCGCCTGCTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacctaccccctccttccccaccgccctctctctccccaccctagggtttccccgtctgacctcgattccgccttcgatccgtccgcgccttgcag
species | Oryza sativa |
transcript | LOC_Os01g05420.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88400934|gb|CI616939.1|CI616939
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|86894950|gb|CI310258.1|CI310258
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88337836|gb|CI676808.1|CI676808
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88718158|gb|CI741668.1|CI741668
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: GGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88336779|gb|CI644206.1|CI644206
genomic: GGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88429087|gb|CI689967.1|CI689967
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88326162|gb|CI659974.1|CI659974
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGAEST: gi|88569692|gb|CI660867.1|CI660867
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
EST: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCC CTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
genomic: CTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacct ... cgccttgcagCTACATCGACGAGGACGGCGAGCCGCTCATGGACCCCTACGACACGCGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCTCCTTCCTCGTCATCTCCAAGTTCACCAGCTCCCCCTCCTCGCCTGCTCGCCTAGGGTTTCGATTCGGATCTCGCCGCCGTCGCCATGGATGACCCgtaagtacctaccccctccttccccaccgccctctctctccccaccctagggtttccccgtctgacctcgattccgccttcgatccgtccgcgccttgcag
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