1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACCTTAGATGATGATAACTTCATTGATGATACTGGGGTTGATCCAGCTGACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcctaacatccttaacttctcagatgcttttcaggttattattgcatttcaagtttacatgaaaattatatggagaaggaaaagaaaggaaat...
species | Oryza sativa |
transcript | LOC_Os01g05420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGGEST: gi|29631192|gb|CB636201.1|CB636201
genomic: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
EST: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGGEST: gi|58652440|gb|CK041120.1|CK041120
genomic: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
EST: CACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGGEST: gi|58659042|gb|CK047722.1|CK047722
genomic: CACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
EST: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGGEST: gi|29670426|gb|CB666701.1|CB666701
genomic: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
EST: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGGEST: gi|29679611|gb|CB675886.1|CB675886
genomic: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
EST: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAG GCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
genomic: ACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcc ... tttatcatagGCAGAGGAAGGGGAAGAGGATGATGAAATTGAGCGGCTCTTTAAGGGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTTAGATGATGATAACTTCATTGATGATACTGGGGTTGATCCAGCTGACCGTTATGGCAGCGATAATGATGGCCACTCACCTCGGCATTACCCTCAGgtatccatcctaacatccttaacttctcagatgcttttcaggttattattgcatttcaagtttacatgaaaattatatggagaaggaaaagaaaggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa