1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggctatcttgctcttgtttcgttcttattgcaccataaaagcccactagctttagcatatgcacacacttttagttcatatggctttattttcattcctcaggactactttctcatggaaggtttttgatctatttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGTGGTCTTGGGAAG
species | Oryza sativa |
transcript | LOC_Os01g05420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGAT TTTCCAATTGATTTGGAGCAATACAATAGAAGGGAGCAGCTTNNNNNNNGTEST: gi|58652440|gb|CK041120.1|CK041120
genomic: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGATgtaggctatc ... atttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGT
EST: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGAT TTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGEST: gi|58659042|gb|CK047722.1|CK047722
genomic: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGATgtaggctatc ... atttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAG
EST: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGAT TTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTNNNNNNNGTEST: gi|29670426|gb|CB666701.1|CB666701
genomic: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGATgtaggctatc ... atttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGT
EST: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGAT TTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTNNNNNNNGTEST: gi|29679611|gb|CB675886.1|CB675886
genomic: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGATgtaggctatc ... atttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGT
EST: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGAT TTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTNNNNNNNGT
genomic: GCTTGCCAAATATGAATATTCGAACAGCTGTTCTGAAATTATTAACTGATgtaggctatc ... atttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGT
attttcattcctcaggactactttctcatggaaggtttttgatctatttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGTGGTCTTGGGAAG
ttttgat putative branch site (score: 39)
tctattt CT-rich tract
tttttgatctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctatcttgctcttgtttcgttcttattgcaccataaaagcccactagctttagcatatgcacacacttttagttcatatggctttattttcattcctcaggactactttctcatggaaggtttttgatctatttacacagTTTCCAATTGATTTGGAGCAATACGATAGAAGGGAGCAGCTTAAAAAAAGTGGTCTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT