1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctatattctatgtatactgtcaatatgctatgctgcttgtttttctgcctgctattattgcttatcaataacttgagtttgattacttcatatttttcagGTATCATTGTCCAGATCATGTGAACCCTGCTGAGTTCTTGGCTGATCTCATTTCTGTTGATTATAGTTCTGCTGAAAGTGTGCAGTCATCACGGAAAAGG
species | Oryza sativa |
transcript | LOC_Os01g03144.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tgcctgctattattgcttatcaataacttgagtttgattacttcatatttttcagGTATCATTGTCCAGATCATGTGAACCCTGCTGAGTTCTTGGCTGATCTCATTTCTGTTGATTATAGTTCTGCTGAAAGTGTGCAGTCATCACGGAAAAGG
tatttttc CT-rich tract
attacttcatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatattctatgtatactgtcaatatgctatgctgcttgtttttctgcctgctattattgcttatcaataacttgagtttgattacttcatatttttcagGTATCATTGTCCAGATCATGTGAACCCTGCTGAGTTCTTGGCTGATCTCATTTCTGTTGATTATAGTTCTGCTGAAAGTGTGCAGTCATCACGGAAAAGG
- - - - tatgtat
- - - - - - - - - - - -tatgcta
- - - - - - - - - - - - - - - tgctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataac