1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcaggctatgtgataaacaacttagccaatagtatgatagtactataatttctcctctttgccaattgctaactgttttctttttttttttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCACTAAATCATGCGGCAATAAAACAATTAGCCGCCCAAGCCCATCACTTTG
species | Oryza sativa |
transcript | LOC_Os01g03144.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88226038|gb|CI225954.1|CI225954
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88236675|gb|CI235877.1|CI235877
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88236563|gb|CI235765.1|CI235765
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88463772|gb|CI527099.1|CI527099
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|25806937|gb|CA762898.1|CA762898
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|86535396|gb|CI175602.1|CI175602
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGGATGAGAGGATCAEST: gi|87038312|gb|CI192934.1|CI192934
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88273962|gb|CI394368.1|CI394368
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTG-CAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|88476226|gb|CI413497.1|CI413497
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTTAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTGTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|86851387|gb|CI313985.1|CI313985
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCAEST: gi|87039299|gb|CI193921.1|CI193921
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
EST: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAG AGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
genomic: AAGTTAAGGAAGTGAAATGAAGTGCTGCCAGCAACATTTTGCCAGCAAAGgtaaaagaga ... ttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCA
ataatttctcctctttgccaattgctaactgttttctttttttttttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCACTAAATCATGCGGCAATAAAACAATTAGCCGCCCAAGCCCATCACTTTG
tgctaac putative branch site (score: 4)
ttgctaactgttttct CT-rich tract
taactgttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaggctatgtgataaacaacttagccaatagtatgatagtactataatttctcctctttgccaattgctaactgttttctttttttttttcttatcagAGAGAAGCTGCACCTTCTTCACAGCATCTCGGCATGAGAATGAGAGGATCACTAAATCATGCGGCAATAAAACAATTAGCCGCCCAAGCCCATCACTTTG
ttcaggc
- - - - -tgtgata
- - - - - - - - aacaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgcc