1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCTTCCAAGGGCTTTGCATTAATGAGTTCAAAGGTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgttcatgtggacctgcaaaaggcagttttacatttttactgttacaaaaatgcagacacacacttggttaagtgccagtgagatattgctcg...
species | Oryza sativa |
transcript | LOC_Os01g03144.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTTCGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAG GCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTGEST: gi|87038312|gb|CI192934.1|CI192934
genomic: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgt ... tctatggcagGCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTG
EST: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAG GCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTGEST: gi|87039299|gb|CI193921.1|CI193921
genomic: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgt ... tctatggcagGCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTG
EST: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAG GCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTGEST: gi|38565862|gb|CK085315.1|CK085315
genomic: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgt ... tctatggcagGCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTG
EST: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAG GCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTG
genomic: GTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgt ... tctatggcagGCCCTGGAGAGGTTTTCATTAGGAGGAATCCGCATTGCAGACACGCTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTTCCAAGGGCTTTGCATTAATGAGTTCAAAGGTTTGCAATTTGAGCAACAGCATTCCTATGACATTCAAACTGGTGAACAGgtacggttgttcatgtggacctgcaaaaggcagttttacatttttactgttacaaaaatgcagacacacacttggttaagtgccagtgagatattgctcg
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