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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctaccaggccattcaaaatcagatcaaaatattacgtgttgttctcaaatgcaaaatacttcatggctgtactgaagtttggatttagttacttc...

Basic information

species Oryza sativa
transcript LOC_Os01g02020.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g02020.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G860137_T02 (Zea mays), 5'ss of exon 11
GGAAAGCTTAACCTAAGTGGTGGTGGTGTTTCTCTGGGCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctaccaggccattcaaaatca-gatcaaaatattacgtgttgttctcaa----atgcaaaatacttcatggctgtactgaagtttggatttagttacttc
|||||||| ||| |||||||||||| |||||| |||||||||||||| ||||||||||||||  | || || ||||||||||| |||||||||| |     |||  | ||| | |||  |  ||||   ||      ||||     ||||   ||   |||     || | |   ||| ||  ||       
GGAAAGCTAAACTTAAGTGGTGGTGCTGTTTCCCTGGGCCATCCTATCGGTTGCAGTGGTGCACGGATAATTGTCACTTTGCTTGGGgtatgcttctgactcatgtataattatgatgtacttattgactgcaaaattcaacttggtgcatggtataacatcctctta-tcacacttgtatacagccc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88449714|gb|CI539089.1|CI539089
EST:     TTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: TTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|86886429|gb|CI336132.1|CI336132
EST:     GCCATCCTATTGGTTCCACTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88470166|gb|CI407437.1|CI407437
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88261356|gb|CI364932.1|CI364932
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|125863427|gb|EL586709.1|EL586709
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88457931|gb|CI542113.1|CI542113
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|89191076|gb|CI392929.1|CI392929
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|86600622|gb|CI356379.1|CI356379
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88276828|gb|CI395991.1|CI395991
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|22306530|gb|BQ907752.1|BQ907752
EST:     CATCCTATT-GTT-CAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATT-GGGTTGCTGGAGTTTGCAATGGA
genomic: CATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|86868992|gb|CI334364.1|CI334364
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88272428|gb|CI386283.1|CI386283
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTC-GG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88322667|gb|CI542995.1|CI542995
EST:     AGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: AGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|89194176|gb|CI116613.1|CI116613
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|86494598|gb|CI137231.1|CI137231
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: gi|88260275|gb|CI362568.1|CI362568
EST:     GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG                         ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGGTTTGCAATGG
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGA-GTTTGCAATGG