1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgttcttgtcttcttcaatttagacagtacttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
species | Oryza sativa |
transcript | LOC_Os01g02020.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCAAACTTCGCAAATAGATTATTATGAGATAAACGAAGCTTTCTCC GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCGEST: gi|58609247|gb|CK037280.1|CK037280
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: GTCTCCAAACTTCGCAAATAGATTATTATGAGATAAACGAAGCTTTCTCC GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCGEST: gi|218504789|gb|FG958555.1|FG958555
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
EST: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCC GTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
genomic: GTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttctt ... actttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
acttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
tacttac putative branch site (score: 12)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcttgtcttcttcaatttagacagtacttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacagGTCGTTGCTTTAGCCAACCAGAAGCTTCTTGGTATTCCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC