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...ttatctgtcagcgccattttctctctttaatctgcacctttagcatgcaaaatgttgcaatcttcctctttgttaaacatcaacacgttttgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT
species | Oryza sativa |
transcript | LOC_Os01g02020.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAEST: gi|125863427|gb|EL586709.1|EL586709
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGG ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAEST: gi|15008105|gb|AU222493.1|AU222493
genomic: GCCATCCTATTGGTTGCAGTGGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
EST: GGTGCGAGAATCATAGTCACTTTGCTCGGG ATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
genomic: GGTGCGAGAATCATAGTCACTTTGCTCGGGgtatgctacc ... tgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGA
tgcaaaatgttgcaatcttcctctttgttaaacatcaacacgttttgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT
ttttgctcc CT-rich tract
tttgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctgtcagcgccattttctctctttaatctgcacctttagcatgcaaaatgttgcaatcttcctctttgttaaacatcaacacgttttgctccacagATTCTTAGACATAAAAATGGAAAGATTGGGGTTGCTGGAGTTTGCAATGGAGGTGGTGGTGCTTCTGCCCTTGTTGTGGAACTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - -atgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatca