1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatataatttggaccgacctaaaattggttttctacatgacatatcaacacttcagtcactggcacagatttcataaaacattctggatttttcag
species | Oryza sativa |
transcript | LOC_Os01g02020.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATTTTCTTGGGAAATTGCTCCG GTTGAAATTTCTTCCGGTAGAGGGAAAGCAGCACTTATTGTTGACAAGGATEST: gi|218504789|gb|FG958555.1|FG958555
genomic: CATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
EST: GTGC-ATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCG GTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATEST: gi|29641199|gb|CB646206.1|CB646206
genomic: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
EST: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCG GTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATEST: gi|29675316|gb|CB671591.1|CB671591
genomic: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
EST: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCG GTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGATEST: gi|29640750|gb|CB645757.1|CB645757
genomic: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
EST: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCG GATGAAATTTCTTCCGGTAGAGGGAAACCACCACTTAEST: gi|218480326|gb|FG963594.1|FG963594
genomic: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTA
EST: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCG GTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
genomic: GTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatat ... gatttttcagGTTGAAATTTCTTCCGGTAGAGGGAAACCACCACTTATTGTTGACAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTTTATGCTATCCAGAGCAATGAACGTGCAATAGCAGCTCGTGATAGCGGCACATTTTCTTGGGAAATTGCTCCGgtgggtatataatttggaccgacctaaaattggttttctacatgacatatcaacacttcagtcactggcacagatttcataaaacattctggatttttcag
- - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC