Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACTgtaagttgtatttttcttaattttcaaattatagccaacataagaatttccttagagtggcttcaatgaaatcccatctataaccttttgtgcctttcttttttgagacag

Basic information

species Glycine max
transcript GLYMA20G39250.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409088|gb|EV278896.1|EV278896
EST:     ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT                         TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
genomic: ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACTgtaagttgta ... tttgagacagTTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
EST: gi|151393423|gb|EV263298.1|EV263298
EST:     ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT                         TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
genomic: ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACTgtaagttgta ... tttgagacagTTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
EST: gi|151400878|gb|EV270692.1|EV270692
EST:     ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT                         TTCA-CTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
genomic: ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACTgtaagttgta ... tttgagacagTTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
EST: gi|12496541|gb|BG047116.1|BG047116
EST:     ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT                         TTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA
genomic: ACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACTgtaagttgta ... tttgagacagTTCAACTTGAAGCGTGGTGGGCAGCGAATAGCCACAATGCTTATGTATTTA