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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatatgacttattttttcatgctatatctgaacaagatgggttttactagtatcaagactaacatctgcagcagcacagGTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT

Basic information

species Glycine max
transcript GLYMA20G39250.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         C
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacag-
EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         C
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacag-
EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         C
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacag-
EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         C
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacag-
EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         C
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacag-
EST: gi|151393423|gb|EV263298.1|EV263298
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         GTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacagGTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC
EST: gi|151400878|gb|EV270692.1|EV270692
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         GTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacagGTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC
EST: gi|12496541|gb|BG047116.1|BG047116
EST:     GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAG                         GTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC
genomic: GTCTATTCCCAAATACCAATTGAAAATGGAGAGCTTATGCAAGTCCTGAGgtgagaatat ... agcagcacagGTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctgaacaagatgggttttactagtatcaagactaacatctgcagcagcacagGTACGAGAAGAATCAATATTACAAACCCCATCATGACTATTTTTCTGATACT
                                gactaac  putative branch site (score: 1)
                 ttttacta  TA-rich tract