1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgggcaattaacagtaacttaaaaaaaaaatcatctgctgaataaaaactatgctgatgatgggcatacgagtgtattaaaattattttatcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATGTTGTGGATACAAAAACTGGAAAG
species | Glycine max |
transcript | GLYMA20G39250.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATEST: gi|151393423|gb|EV263298.1|EV263298
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
EST: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATEST: gi|151400878|gb|EV270692.1|EV270692
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
EST: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAG GAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
genomic: TTAACTGGTCTCCACGAATTATTTTACTCCACAACTTCCTGAGCATGGAGgtatgacctc ... atcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAAT
aaaactatgctgatgatgggcatacgagtgtattaaaattattttatcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATGTTGTGGATACAAAAACTGGAAAG
tgctgat putative branch site (score: 3)
ttttatcttc putative PPT
agtgtattaaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgggcaattaacagtaacttaaaaaaaaaatcatctgctgaataaaaactatgctgatgatgggcatacgagtgtattaaaattattttatcttcacagGAATGCGATTATCTCAGGGCTATTGCTCTCCCTCGCCTGCATATTTCAAATGTTGTGGATACAAAAACTGGAAAG
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatacg