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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagtataattttattatttcttaggttaaatttaggatttattattatagcactttcttattctctgttacccttactgctccatgtatgtagGCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTCACCTTCAACTGCCAAGAG

Basic information

species Glycine max
transcript GLYMA20G39250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409088|gb|EV278896.1|EV278896
EST:     GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATG                         GCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTC
genomic: GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATGgtataagtat ... atgtatgtagGCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTC
EST: gi|151393423|gb|EV263298.1|EV263298
EST:     GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATG                         GCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTC
genomic: GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATGgtataagtat ... atgtatgtagGCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTC
EST: gi|151400878|gb|EV270692.1|EV270692
EST:     GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATG                         GCACTGATTCTTTGCCATTTAGTAGATTGCGTGGATTCGACACTGATCGTC
genomic: GCGCTCTCTCTCAATTGGCTATCATACGAAGATTGGAAGACTCTCATGgtataagtat ... atgtatgtagGCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattattatagcactttcttattctctgttacccttactgctccatgtatgtagGCACTGATTCTTTGCCATTTAGTAGATTGCGTGGACTCGACACTGATCGTCACCTTCAACTGCCAAGAG
                                cccttac  putative branch site (score: 3)
               tttcttatt  TA-rich tract