1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAAATGTGACTTCATCATTCCCCCACTATGGGCATTCAGGCATAGTTGAGGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTGgtaagaaatacttcagtttttttatagtgatggttctttcttctgtagagttggtcctatcaaactgtttcttcttcctctttcctgctttctatgataa...
species | Glycine max |
transcript | GLYMA20G39210.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTG ACTCGGAATCCTATGGACTTCTTTCTAAATTACTGGGATTTGGTTGTGAATEST: gi|21888693|gb|BQ741906.1|BQ741906
genomic: GGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTGgtaagaaata ... ggaaatgcagACTCGGAATCCTATGGACTTCTTTCTAAATTACTGGGATTTGGTTGTGAAT
EST: GGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTG ACTCGGAATCCTATGGACTTCTTTCTAAATTACTGGGATTTGGTTGTGAAT
genomic: GGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTGgtaagaaata ... ggaaatgcagACTCGGAATCCTATGGACTTCTTTCTAAATTACTGGGATTTGGTTGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATGTGACTTCATCATTCCCCCACTATGGGCATTCAGGCATAGTTGAGGCTGCACGAGAGCTTTTTATGCAGATTGAAGGAAATCCTGAAGGGCCTGgtaagaaatacttcagtttttttatagtgatggttctttcttctgtagagttggtcctatcaaactgtttcttcttcctctttcctgctttctatgataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG