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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattatagctgattctctttggtaacattttcagtttctgcttgctttcattgatgcag

Basic information

species Glycine max
transcript GLYMA20G39210.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39210.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 11
CTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattatagctgattctctttggtaac--att-ttcagtttctgcttgctttcattgatgcag
|||  |  | | | |||||| ||  |||| ||  | ||||| || ||||||||| | ||||  | ||||||| | |||||||||||||||||||||||||||    | |  | |  |   ||||| ||   | ||   ||  || ||  ||| || ||   ||   |||  |  || |     
CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaa----atttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag--

upper sequence: GLYMA20G39210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0124g00200.t01 (Vitis vinifera), 5'ss of exon 5
CTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattatagctgattctctttggtaacattttcagtttctgcttgctttcattgatgcag-------------------------------------------------------------------------------------
 | |||  ||| ||||| ||| | ||||| || || |||||| | || |||||| |||||| |||||| ||| ||||||||||||||||||| |||||||||||| |   |  |  |||| |   |  ||   || |  |          |    |||     || |   |   || |||                                                                                     
TTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAGgtaattgcaaatgataccagttggtccaaggcaagttattgtcctcttttgctgttcttttcatgtgttcctaccaattcagtgaataacaattgtagcaaggatttgtatatagattttctattgcctgggacacctaataatggaggtgcttgaacttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813881|gb|BI786156.1|BI786156
EST:     CCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAG                         CATTATATTTGGAAATGAATTTTCATCACGCCTTTCAATTGGATCCATTAT
genomic: CCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtac ... attgatgcagCATTATATTTGGAAATGAATTTTCATCACGCCTTTCAATTGGATCCATTAT
EST: gi|21888693|gb|BQ741906.1|BQ741906
EST:     CCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAG                         CATTATATTTGGAAATGAATTTTCATCACGCCTTTCAATTGAATCCATTAT
genomic: CCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtac ... attgatgcagCATTATATTTGGAAATGAATTTTCATCACGCCTTTCAATTGGATCCATTAT