1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAGAGAGGGGAAAATGTTATAGAGCTTACATAGCAAATAGAGAAAGCTTCAAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaattaccatcgtatcctttcctcgtttctaaacttgaaatgcttgataagttcttacttgagttactacttctggtcaaatgttcgacttgcag
species | Glycine max |
transcript | GLYMA20G39210.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCAEST: gi|19270034|gb|BM886290.1|BM886290
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
EST: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCAEST: gi|12688936|gb|BG155272.1|BG155272
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
EST: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGAGGGGAAAATGTTATAGAGCTTACATAGCAAATAGAGAAAGCTTCAAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaattaccatcgtatcctttcctcgtttctaaacttgaaatgcttgataagttcttacttgagttactacttctggtcaaatgttcgacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG