Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcaaattaccatcgtatcctttcctcgtttctaaacttgaaatgcttgataagttcttacttgagttactacttctggtcaaatgttcgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCAAGTAACGGAACCTCACATCATCTGATATATATATTTAATATCAATGAAC

Basic information

species Glycine max
transcript GLYMA20G39210.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342127|gb|CO983388.1|CO983388
EST:     AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG                         ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
EST: gi|19270034|gb|BM886290.1|BM886290
EST:     AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG                         ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
EST: gi|12688936|gb|BG155272.1|BG155272
EST:     AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAG                         ATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA
genomic: AAAGATATTATTGTTTCACCATCCATGTTCCTTGACCATCTTCCTTGGAGgtatggcaaa ... cgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgataagttcttacttgagttactacttctggtcaaatgttcgacttgcagATGTCACGATGCCTTGCAAAAGATATTGAAAGCTCAAACTGCTAAAGATCAAGTAACGGAACCTCACATCATCTGATATATATATTTAATATCAATGAAC
           ttcttac  putative branch site (score: 2)
      ataagtt  TA-rich tract