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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccctttgactataggacaaaaggaccctttaagttcataatgtgcatgaaaataaaatgttgcacacattggttgtttgtgtgtatttatgccttgttgtttgtttcaagcag

Basic information

species Glycine max
transcript GLYMA20G39130.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193500294|gb|FK465323.1|FK465323
EST:     TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG                         GTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
genomic: TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccc ... tttcaagcagGTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
EST: gi|298182625|gb|HO031360.1|HO031360
EST:     TGCCCAGAAACCGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACGG                         GTTGATGAGGCTGTTAC
genomic: TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccc ... tttcaagcagGTTGATGAGGCTGTTAC
EST: gi|151410305|gb|EV280120.1|EV280120
EST:     TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG                         GTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
genomic: TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccc ... tttcaagcagGTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
EST: gi|9819928|gb|BE555371.1|BE555371
EST:     TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG                         GTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
genomic: TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccc ... tttcaagcagGTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGACAAAAACATGGCC
EST: gi|192326780|gb|FK018907.1|FK018907
EST:     TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG                         GTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGAC
genomic: TGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAGgtcactcccc ... tttcaagcagGTTGATGAGGCTGTTACTGAGGAAAATACTGATACCGAC