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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttcctttcctcctttcgcaactctataattcttcctttctcttatcattttgcttcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG

Basic information

species Glycine max
transcript GLYMA20G39130.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201613|gb|BI424966.1|BI424966
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|18848422|gb|BM567660.1|BM567660
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGT
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGT
EST: gi|193500294|gb|FK465323.1|FK465323
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|298182625|gb|HO031360.1|HO031360
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTCTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|7796792|gb|AW782186.1|AW782186
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCA
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCA
EST: gi|298196556|gb|HO041299.1|HO041299
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|151410305|gb|EV280120.1|EV280120
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|9819928|gb|BE555371.1|BE555371
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|298193670|gb|HO040318.1|HO040318
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCC
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCC
EST: gi|15201870|gb|BI425101.1|BI425101
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
EST: gi|192326780|gb|FK018907.1|FK018907
EST:     GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCAT                         GCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG
genomic: GGCCTTGCCGCCTCCCCAATCTTCCTCTCCTTTCATGGCTCTTCTACCATgtcagttcct ... tcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttcgcaactctataattcttcctttctcttatcattttgcttcttttatagGCTTGGTCCCATGGACAACCAGTTTAAGCAACGCAAAACTGGAGTGCCCAGAAACTGCAATCCTCGCCAAATTGCAACTACTAGACCTCTACAG
                   ttcttcctttctctta  CT-rich tract
              tataattctt  TA-rich tract