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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAAGAGATGATTTGATGAACACGGAGTCCGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattgtggcactgttattcttcctgttcttgttctaatatcaattaatacatccacacgacaacgccatctgattgatggaatttacag

Basic information

species Glycine max
transcript GLYMA20G39130.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201613|gb|BI424966.1|BI424966
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|18848422|gb|BM567660.1|BM567660
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|193322768|gb|FK290432.1|FK290432
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|298182625|gb|HO031360.1|HO031360
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|298176784|gb|HO023257.1|HO023257
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|7796792|gb|AW782186.1|AW782186
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|207777687|gb|GD747578.1|GD747578
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|298196556|gb|HO041299.1|HO041299
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|18848632|gb|BM567773.1|BM567773
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCA
EST: gi|151410305|gb|EV280120.1|EV280120
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|298193670|gb|HO040318.1|HO040318
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGACGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|15201870|gb|BI425101.1|BI425101
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
EST: gi|192326780|gb|FK018907.1|FK018907
EST:     CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAG                         TTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA
genomic: CGACAAGTTCGACACCATCTTGGATGAGTTCGACAAGTTACACGTCCAAGgtaggtattg ... gaatttacagTTGAGAAGCCGAGGGAGCAAGTTGCAGATGCGGAGGCACTGCTGGATCTCA