1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtttggcttctatgattcattttagaaataattatttttacatcaccccacttaaattaaaatgcaatacttgatacaataatgtcattaccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAG
species | Glycine max |
transcript | GLYMA20G39050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAA GCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGEST: gi|254329429|gb|GR838982.1|GR838982
genomic: GGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAAgtaggaatat ... taccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAG
EST: GTCGGTTGAGAAAGAAA GCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGEST: gi|192300889|gb|FG992949.1|FG992949
genomic: GTCGGTTGAGAAAGAAAgtaggaatat ... taccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAG
EST: GGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAA GCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAG
genomic: GGCTTGCTCAGAATCGTGAGGCAGCAAGAAAAAGTCGGTTGAGAAAGAAAgtaggaatat ... taccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAG
caccccacttaaattaaaatgcaatacttgatacaataatgtcattaccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAG
acttgat putative branch site (score: 5)
ttacccc putative PPT
ttaaattaaaatgcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttggcttctatgattcattttagaaataattatttttacatcaccccacttaaattaaaatgcaatacttgatacaataatgtcattaccccacagGCTTATGTTCAACAGCTTGAAAGTAGTCGCTTAAAGTTAACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT