1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgattgatctgttctttttattcttgctaacatgtatagactttttctccatcttttcattttctaataatattatctgattatctgatatgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG
species | Glycine max |
transcript | GLYMA20G39050.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAA ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCEST: gi|213591525|gb|DB973874.1|DB973874
genomic: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAAgtaagtattc ... tgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
EST: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAA ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCEST: gi|193341012|gb|FK306364.1|FK306364
genomic: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAAgtaagtattc ... tgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
EST: GAGGATTGTGTTGCCTTGAGGGGAA ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCEST: gi|193425579|gb|FK386892.1|FK386892
genomic: GAGGATTGTGTTGCCTTGAGGGGAAgtaagtattc ... tgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
EST: GAGGATTGTGTTGTCCTTGAGGGGAA ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCEST: gi|209724884|gb|BW669573.1|BW669573
genomic: GAGGATTGTGTTG-CCTTGAGGGGAAgtaagtattc ... tgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
EST: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAA ACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
genomic: TGATCAATCAGTTGGATATCGCATAGAGGATTGTGTTGCCTTGAGGGGAAgtaagtattc ... tgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTC
tctccatcttttcattttctaataatattatctgattatctgatatgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG
atcttttcattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgatctgttctttttattcttgctaacatgtatagactttttctccatcttttcattttctaataatattatctgattatctgatatgtgattcagACTCAGTTTTTGACTCACTAAAAGTAAGTAGCCAAACAATTTCTCGGGGTCCTGTTGAAGTTGATTCCTTTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG