1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttatgttttgattgagagtagtttagtttgtctgcctccagtcaagcaaagattatgtttttgattctgtgaaatatttattttggtcatggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGCCGGTGTTTGTGTAGAAGATGAAAAGGGAACAGCAAGAGGGATGCCGAGC
species | Glycine max |
transcript | GLYMA20G39050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: NNNCGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAG GTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGCEST: gi|213591525|gb|DB973874.1|DB973874
genomic: AAACGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAGgtgcgttccc ... tggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGC
EST: AAACGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAG GTCTTGTATTGCAAGGTTATTGAGGATATGACGGTGTGTGTGGAGTAGAGCEST: gi|209724884|gb|BW669573.1|BW669573
genomic: AAACGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAGgtgcgttccc ... tggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGC
EST: AAACGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAG GTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGC
genomic: AAACGTTGAACAGATACCATCATCATCACCCACATCATCAGAATTTCAAGgtgcgttccc ... tggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGC
agcaaagattatgtttttgattctgtgaaatatttattttggtcatggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGCCGGTGTTTGTGTAGAAGATGAAAAGGGAACAGCAAGAGGGATGCCGAGC
ttttgat putative branch site (score: 4)
tcctt putative PPT
tttttgattctgtgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatgttttgattgagagtagtttagtttgtctgcctccagtcaagcaaagattatgtttttgattctgtgaaatatttattttggtcatggtccttagGTCTTGTATTGCAAGGTTATTGAGGATATGATGGTGTGTGTGGAGTAGAGCCGGTGTTTGTGTAGAAGATGAAAAGGGAACAGCAAGAGGGATGCCGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - tgttttg
- - - - - - - - - - - - - - - - -tgcctcc
- - - - - - - - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg