1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaagttgcattttgcctttcatgcaattttcttttttcttgattttgaacctgtttagattgaactcatcatcaaggattcaacttttccttctgttccttaaaatagaggttttttagttgatattccttacaatctgacatttgtgcattccttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAG
species | Glycine max |
transcript | GLYMA20G39050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGG TTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGAEST: gi|193592631|gb|FK545709.1|FK545709
genomic: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGGgtgaagttgc ... ttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGA
EST: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGG TTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAEST: gi|192300889|gb|FG992949.1|FG992949
genomic: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGGgtgaagttgc ... ttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCA
EST: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGG TTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGA
genomic: CTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGGgtgaagttgc ... ttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGA
ggttttttagttgatattccttacaatctgacatttgtgcattccttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAG
cattcctt CT-rich tract
ttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagttgcattttgcctttcatgcaattttcttttttcttgattttgaacctgtttagattgaactcatcatcaaggattcaacttttccttctgttccttaaaatagaggttttttagttgatattccttacaatctgacatttgtgcattccttgtgtacagTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGTTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA