1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttaaattaatttgtttctcatctcatctcttttgactcctttgagattttattttgttttattgattcttagcttcttctgtgttgccaaactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACC
species | Glycine max |
transcript | GLYMA20G38980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTCGGEST: gi|19053775|gb|BM732442.1|BM732442
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
EST: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGEST: gi|15663739|gb|BI701110.1|BI701110
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
EST: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATACTTTTGGEST: gi|15663685|gb|BI701056.1|BI701056
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
EST: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGEST: gi|21888801|gb|BQ742014.1|BQ742014
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
EST: CGTCTTCATTCAACTCGTGTATTGNGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTEST: gi|8669663|gb|BE190770.1|BE190770
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTT
EST: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGA ATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
genomic: CGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaagcttcg ... aactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGG
gattttattttgttttattgattcttagcttcttctgtgttgccaaactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACC
tattgat putative branch site (score: 3)
tattttgttttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaattaatttgtttctcatctcatctcttttgactcctttgagattttattttgttttattgattcttagcttcttctgtgttgccaaactttacagATATGCAATGACTGGGCAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - -tcctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc