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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagcttcgtgtcctatcttgtatttcatatctattatgttccgtcaatgattttggttgtctttccactacag

Basic information

species Glycine max
transcript GLYMA20G38980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 3
GACAATTTTGTTGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagcttcgtgtcctatcttgtatttcatatctattatgttccgtcaatgattttggttgtctttccactacag--
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GACAATTTTGTTCAGCTTCTTGGTTATTGTGTAGAAGGGAACCTTCGTGTCCTTGCTTATGAGTTTGCCACAATGAGATCATTGCACGACATCTTACACGgtaagaaagatttctttctg-ctcaaacatcaa------tatggcttaggatggagattgataaacttgatgctaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820246|gb|BE555756.1|BE555756
EST:     ATGGGCTCTCTTCATGACATATTGCACG                         GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
genomic: ATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: gi|15663739|gb|BI701110.1|BI701110
EST:     ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG                         GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: gi|15663685|gb|BI701056.1|BI701056
EST:     ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG                         GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: gi|21888801|gb|BQ742014.1|BQ742014
EST:     ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG                         GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC