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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgacccaggcaaggctctgccatcaactaaactaaacaaactattataatttatacactgcaagTATGACG

Basic information

species Glycine max
transcript GLYMA20G38980.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888801|gb|BQ742014.1|BQ742014
EST:     GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGA                         G
genomic: GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAgtttttgacc ... acactgcaag-
EST: gi|21888801|gb|BQ742014.1|BQ742014
EST:     GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGA                         G
genomic: GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAgtttttgacc ... acactgcaag-
EST: gi|21888801|gb|BQ742014.1|BQ742014
EST:     GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGA                         G
genomic: GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAgtttttgacc ... acactgcaag-
EST: gi|21888801|gb|BQ742014.1|BQ742014
EST:     GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGA                         G
genomic: GTGGCTGTGAAAAAGCTTGATGTTTCATCTGAACCCGAATCAAATAATGAgtttttgacc ... acactgcaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggctctgccatcaactaaactaaacaaactattataatttatacactgcaagTATGACG
                    aactaaa  putative branch site (score: 2)
            atcaactaaactaaac  TA-rich tract