1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtagcttcgtgtcctatcttgtatttcatatctattatgttccgtcaatgattttggttgtctttccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTACA
species | Glycine max |
transcript | GLYMA20G38980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGGCTCTCTTCATGACATATTGCACG GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACEST: gi|15663739|gb|BI701110.1|BI701110
genomic: ATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACEST: gi|15663685|gb|BI701056.1|BI701056
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACEST: gi|21888801|gb|BQ742014.1|BQ742014
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
EST: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACG GTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
genomic: ACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATATTGCACGgtatgtagct ... tccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATAC
tgtatttcatatctattatgttccgtcaatgattttggttgtctttccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTACA
ttgtctttcc CT-rich tract
ttcatatctattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagcttcgtgtcctatcttgtatttcatatctattatgttccgtcaatgattttggttgtctttccactacagGTAGAAAGGGAGTTCAAGGTGCTCAACCTGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG