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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagtcaatctaaatgaggtgt...

Basic information

species Glycine max
transcript GLYMA20G38810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagt--caatctaaatgaggtgt----------------------------------------------------
 ||||| |||||||||||| | ||||||||||| ||||||||||||||||| || |||   || |||||| |||| || ||  |||||||||||||||||||   ||   | |||  | || |   |   | | |     || ||       ||  |||     || |   | | | |  ||   ||||  |    | ||||                                                    
TTTTCCAGGTCATCCTGCTTTAGACGAGGATGGAAGAAATGCTTTGAGACGTTTGCTTCTAGCTTATGCTAGACACAATCCAGCAGTTGGTTACTGCCAGgtaaatgtgccgttactg-gtgatccgcattgtgtcctttatcttg------atggaagtcagcttctttgtaactctgtagcaacaattgattccaagtgttatgataaaatagtttgagtaacaattgtacttggatattggtgaactgtag

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g61860.2 (Oryza sativa), 5'ss of exon 4
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagt-caatctaaatgaggtgt
 || || |||||||| || || || |||||||| ||||||||||| ||||| || || || || |||||  |||||||||| |||||||||||||| |||||      |||  | |    | ||   |   | |||||   |   |   |||     ||||  |||    |   ||    | | |||    |||  | || 
GTTCCCAGGTCATCCCGCACTAGATGAGGATGGCAGAAATGCTTTAAGACGCTTGCTCACAGCTTATGCGAGACATAACCCATCAGTTGGTTACTGTCAGgtatggctttcccttacttctgactcatgtcacttttcttgtcactgg-attgatgtagcttctttgggaaaccttgcatattgcaagaccaatctgttgc

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattattt-ttcagtcaatc--taaatgaggtgt
 |||||||||||||||||| | || |||||||| ||||||||||||||||| || ||||  || |||||   ||| ||||| ||||||||||||||||||||   |    |  |||    ||  ||  || ||| || |  ||| | |||  | |   | |   || |  ||||| | |  ||| | |   | | | || |  
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAACCCATCAGTTGGTTACTGCCAGgtaaatatacccataacacattg-atcctc-attatttctttttatcttaccagagtggattgcttatatattatatatatagttagttagttagttagtta-

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G094951_T01 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattat-ttttcagtcaatctaaatgaggtgt---
 |||||||||||||||||| | || |||||||| ||||||||||||||||| || ||||  || |||||   ||| || || ||||||||||||||||||||   |    |  | |    ||   | ||||  || |  | |||| | | | | ||||||   || ||   |||  | | ||   |  | || |||  | |   
TTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAATCCATCAGTTGGTTACTGCCAGgtaaatctacccgtcacacatt---tattctcattatgtccttttatct-taacaaaagccaattatttatttagatctccaaaaaggcaaactgatatatatt

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G096470_T02 (Zea mays), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagtcaatctaaatgaggtgt---
|||||| || || ||||| || || |||||||| |||||||| || || || || || || || ||||||||||| || ||  |||||||||||||||||||   |   |   | |    |||    |  || |||||   |    |  ||   |  |||| | ||    |    || | |||   |  |  |  ||| |   
ATTTCCAGGACACCCTGCACTAGATGAGGATGGCAGAAATGCCTTAAGGCGCTTGCTCACAGCTTATGCTCGACACAATCCACCAGTTGGTTACTGCCAGgtatatttctaccttagtgcttattgctattacttttcttgtcgaatgaatgtcattagct-tgttacgaagcccttataagtt--ttcaggtctggtctcat

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcc-cattttttttattataaaagctgttt---tttccattatttttcagtcaatctaaatgaggtgt-------------
||||||||||||||||||||| || || ||||||||||||||| |  | || || |||||||| |||||| | ||||| || || || || ||||| |||||  ||| |  |    |   | |     | |||| |    | | | ||||| ||   |  |    |   ||  ||||| | |  ||| ||| |   |      |             
ATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTGTAGGATACTGTCAGgtatttgttcttaaccaatatcatgatctttattgtagtacctctattttagtaccgagacatagtaaattaacattaatatcaagttaatatcttttgtcaatatactttctgcag

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCCTGGTCATCCTGCTCTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAGTTGGTTACTGCCAGgtccttgcttctttaaagagttacatgttctatttttcccattttttttattataaaagctgttttttccattatttttcagtcaatc-taaatgaggtgt--
||| || |||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| || || ||||| |||||  |||  |    |     |||  || |  ||| ||   ||  ||   |  ||| |     ||| || ||  |||| |  ||||  | ||| |||  |    
ATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTGTAGGGTACTGTCAGgtaattggattggaaggagtttatgtggttaattgtttttatggttggaaa-atagagttactttcttgcaaaatttgt--gtcatgcataattgatatagta