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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcactatatacatgagatttgcatttgttgtgaaatttatttattgtttggtgagttaccatcttttttgttattgtgtttcagCTTTGGCAAGCTTTTGTTGGTGTAAAAGCAAGGCGGGTGGAGAAGTATTATCAGGATCTGCTAGCCTCAGAAAATGATTCTGAAATTAAAACTGATCAGC

Basic information

species Glycine max
transcript GLYMA20G38810.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38810.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 3
gta-tgcactatatacatgagatttgcatttgttgtgaaatt--tatttattgtttggtgagttaccatcttttttgttattgtgtttcagCTTTGGCAAGCTTTTGTTGGTGTAAAAGCAAGGCGGGTGGAGAAGTATTATCAGGATCTGCTAGCCTCAGAAAATGATTCTGAAATTAAAACTGATCAGC
||| ||||  |  |||   |   |||||||| || ||    |   | | |||  ||||    | | | || |  |||  ||       |||||||||||||||||||| ||||| || ||| | || ||||||| ||||||||| || |||||||| |||||| || ||  ||  | ||||   || ||| 
gtaatgcataaactactaaactcttgcatttcttttgctcatggcactcatttcttggatgataagcttcatgcttgcaataa-----cagCTTTGGCAAGCTTTTGTGGGTGTGAAGGCACGCCGAGTGGAGAGGTATTATCAAGAGCTGCTAGCTTCAGAACATAATGTTGGCAATAAAGTGGAGCAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaatttatttattgtttggtgagttaccatcttttttgttattgtgtttcagCTTTGGCAAGCTTTTGTTGGTGTAAAAGCAAGGCGGGTGGAGAAGTATTATCAGGATCTGCTAGCCTCAGAAAATGATTCTGAAATTAAAACTGATCAGC
                                tcttttttgttatt  CT-rich tract
     atttatttattgttt  TA-rich tract