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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTACAATCTCCACGgtatataagtttttgaaatatccctgtag

Basic information

species Glycine max
transcript GLYMA20G38810.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G051050_T01 (Zea mays), 5'ss of exon 16
CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTA---------CAATCTCCACGgtatataagtttttgaaatatccctgtag-------------------------------------------------------------------------
         |||||||||| || || || ||||||||| | ||| ||||||||||| |||||||||||||| ||||    ||||   |          |  |||||| ||||  | ||| ||  |  | | |    |                                                                          
---------AAATGGAGAACAGAGCTGTAATGGCAGAAACAATGTTGGAGGCTACACTGCAGTACCAATCTAGCCAGCAGAAAGCAATGTCCCCTTGCCCTTCTCCAAGgtacctcagtctt--atctgttctcacatctattctcacaattctcagtgtgagatggacagctcttaaaactagcaataaggcagtgctaatataccggtc

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 5'ss of exon 16
CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTACAATCTCCACGgtatataagtttt---tgaaatatccctgtag------------------------------------------------------------------------------------------------------------------------------------
|||| ||||||||||||||||| ||||| |||||||| || ||||| ||||| || |||||||| |||||||||||| | ||||  | ||  || ||||||| | |   ||||   |||   | | |   |                                                                                                                                     
CACTGGCTGAAATGGAGAAGAGAGCAGTGATGGCAGAGTCCATGCTCGAGGCAACTTTGCAGTATCAATCTGGCCAACTCAAAGCACAACCTTCACCACGgtgtgttctttttacctgagtcaactcaaaacataaattgtgtacacaactataaacactcaattgggttatgactaatgacccacccttgtgtattctgaattgggtatatatatacatatttttttaaccttccaggcaagttaaccaagattcgtcaccag

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 5'ss of exon 16
CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTACAATCTCCACGgtatataagtttttgaaatatccctgtag----------------------------------------------------------------------
| || || || |||||| ||||||||||||||||||| || ||| ||||||| || |||||||| |||||||||||||||||||  | ||  || ||||||| | |   | ||||  ||||  |    |                                                                      
CTCTCGCGGAGATGGAGGAGAGGGCAGTTATGGCAGAGTCCATGTTGGAGGCGACTTTGCAGTATCAATCTGGCCAAGTTAAAGCACAACCTTCACCACGgtctgt--ttctttggcatatatcaagtgaacttggtgtagaaaactagattttccattgggtgcattaagtcaccattatttttctgaaacttttcag

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 16
CACTTGCTGAAATGGAGAAGAGGGCAGTTATGGCAGAATCTATGCTGGAGGCTACATTGCAGTACCAATCTGGCCAAGTTAAAGTGCTACAATCTCCACGgtatataagt--ttttg-----aaatatccctgtag----------------------------------------------------------------
| |||||| | ||||| |||||||  |||||||||||| | ||| | || ||||| ||||| ||||||||||| ||||||||||  |  |  ||||| |||||| |       ||||     ||| ||  ||                                                                    
CTCTTGCTCAGATGGAAAAGAGGGTGGTTATGGCAGAAACAATGTTAGAAGCTACCTTGCAATACCAATCTGGGCAAGTTAAAGCACAGCCTTCTCCCCGgtatgttgtcaactttgccgataaagatttcttcctctgtgcagtttcatctttgttattgactagatgaatctatcactgtgttcaatatctgttgtga