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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGAGGAGCTGGAAACAGCATTAATGGAAATGGTCAAGCAGGATAATAGGCGGCAACTGAGTGCCAAGgtaagtcatgagcgcacatggttctccacttctctgaaagttcttatcacacatttgtatgggatacggatacttgtattttacttctacatccattttt...

Basic information

species Glycine max
transcript GLYMA20G38810.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 5'ss of exon 13
AGCGGAGGAGCTGGAAACAGCATTAATGGAAATGGTCAAGCAGGATAATAGGCGGCAACTGAGTGCCAAGgta-agtcatgagcgcacatggttctccacttctctgaaagttcttatcacacatttgtatgggatacggatacttgtattttacttctacatccattttt-
||| || || || || || ||||| ||||||||||||||||| ||||||||||||||| | ||||| |||||| || ||       | |   || |  |      ||    ||  |  || | | |   || | |     | |  ||   |||||   | || | ||     
AGCTGATGAACTAGAGACGGCATTGATGGAAATGGTCAAGCAAGATAATAGGCGGCAATTAAGTGCAAAGgtatagccagataactaaacttttgtataaggaggtgttcctttgtgcca-atagtcagattgcaagttcagagatggcgtttacaa-tgcaactatgccac

upper sequence: GLYMA20G38810.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 5'ss of exon 13
AGCGGAGGAGCTGGAAACAGCATTAATGGAAATGGTCAAGCAGGATAATAGGCGGCAACTGAGTGCCAAGgtaagtcatgagcgcacatggttctccacttctctgaaagttcttatcacacatttgtat--gggatacggatacttgtattttacttctacatccattttt---
||| ||||||||||| |||||||| ||||| |||||||| ||||||||  |||||||| ||||||| | ||||  |    ||| |      || | ||| |    |    || | |||     |||| ||  | |  | || |  | |   |   || ||| |      | |   
AGCTGAGGAGCTGGAGACAGCATTGATGGAGATGGTCAAACAGGATAACCGGCGGCAATTGAGTGCAAGGgtacatgtgaagcac-----tttttacacattatagtttattatcatcttcattttggatctgaggcatggctgttgggtgtgctctgctatacttgactgttgt