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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttgatgcaactctgattttattcttttgttactagtcacaaagcatttatattttagatcttatcaccatctcaatggttggttctgaagatattaaaaaaaaacattaatattttctgattgtctttgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGGACAGACATCGCATGCATAATTGCAATCTGCTCCTGTATTTTACTGTGTA

Basic information

species Glycine max
transcript GLYMA20G38790.4
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685581|gb|AW756229.1|AW756229
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|208243451|gb|GE040349.1|GE040349
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGTATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAG-ATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGG
EST: gi|58015683|gb|CX702425.1|CX702425
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATAACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|192300294|gb|FG991426.1|FG991426
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|193304802|gb|FK271713.1|FK271713
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|31469024|gb|CD411052.1|CD411052
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|192318929|gb|FK011459.1|FK011459
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATTTAACATTTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|193376991|gb|FK340626.1|FK340626
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|208079074|gb|GD876998.1|GD876998
EST:     AATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|209705186|gb|BW673726.1|BW673726
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|193320696|gb|FK286539.1|FK286539
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|58018879|gb|CX705621.1|CX705621
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATAACGTGTAGGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaagatattaaaaaaaaacattaatattttctgattgtctttgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGGACAGACATCGCATGCATAATTGCAATCTGCTCCTGTATTTTACTGTGTA
                                ttctgat  putative branch site (score: 3)
                                         tctttgtttt  putative PPT
        atattaaaaaaaaaca  TA-rich tract