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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagctgacattatttctctacaagttgtcttgtactactttattattttattttatatattgatgttcccggatcttcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacag

Basic information

species Glycine max
transcript GLYMA20G38790.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685581|gb|AW756229.1|AW756229
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|208136330|gb|GD933256.1|GD933256
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|58015683|gb|CX702425.1|CX702425
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|151405813|gb|EV275628.1|EV275628
EST:     AAGGCATTCTTCCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAAG                         GGCCGTTCCTTCATCTCAG-CATCTG
genomic: AAGGCATTCTTCC-TCATCTGTTGCTGGTGGCTTACCTCCACTTGGAA-Ggtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|151405233|gb|EV275047.1|EV275047
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCT
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCT
EST: gi|192300294|gb|FG991426.1|FG991426
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|192325538|gb|FK018434.1|FK018434
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATC
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATC
EST: gi|208321592|gb|GE120849.1|GE120849
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|31469024|gb|CD411052.1|CD411052
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|192318929|gb|FK011459.1|FK011459
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATTTCAGGCATTTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|151408547|gb|EV278355.1|EV278355
EST:     AAGGCATTCTTCCTCATCTGTTTGCTGGTGGCTTACCTCCACTTGGAAAG                         GGCCGTTCCTTCATCTCAG-CATCTGATAGAAG
genomic: AAGGCATTCTTCCTCATCTGTT-GCTGGTGGCTTACCTCCACTTGGAA-Ggtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTGATAGAAG
EST: gi|209705186|gb|BW673726.1|BW673726
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|208323255|gb|GE120524.1|GE120524
EST:     TCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: TCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|58018879|gb|CX705621.1|CX705621
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCTCAGGCATCTG
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagctgacattatttctctacaagttgtcttgtactactttattattttattttatatattgatgttcccggatcttcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG