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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtataccatttcttgtgtaaaacatagttaatcttattagaacttgatgtaaatgtgtactgacttctaattaatcgtgcggtgaatatgcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCT

Basic information

species Glycine max
transcript GLYMA20G38790.4
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685581|gb|AW756229.1|AW756229
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|13563206|gb|BG551426.1|BG551426
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|22522110|gb|BU080921.1|BU080921
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|298184578|gb|HO029791.1|HO029791
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGT
EST: gi|58015683|gb|CX702425.1|CX702425
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|151405813|gb|EV275628.1|EV275628
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|298191648|gb|HO039127.1|HO039127
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGAT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGAT
EST: gi|151405233|gb|EV275047.1|EV275047
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|192300294|gb|FG991426.1|FG991426
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|298199357|gb|HO042720.1|HO042720
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|192325538|gb|FK018434.1|FK018434
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAAGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|31469024|gb|CD411052.1|CD411052
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|298168800|gb|HO009730.1|HO009730
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|192318929|gb|FK011459.1|FK011459
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|151408547|gb|EV278355.1|EV278355
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|209705186|gb|BW673726.1|BW673726
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
EST: gi|58018879|gb|CX705621.1|CX705621
EST:     GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAG                         AATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT
genomic: GAGATAGTCCTCTACTCTTGGATGTGCTTGAAGGATTCTTGAAGCTCGAGgtttttcaat ... gcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgtaaatgtgtactgacttctaattaatcgtgcggtgaatatgcttctgtagAATTTATCCCAAGCAAGAGCAAGCGGTAGGAGATTTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCT
                                            tgcttct  CT-rich tract
                    ttctaattaat  TA-rich tract