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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttgatgcaactctgattttattcttttgttactagtcacaaagcatttatattttagatcttatcaccatctcaatggttggttctgaagatattaaaaaaaaacattaatattttctgattgtctttgttttgcag

Basic information

species Glycine max
transcript GLYMA20G38790.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G38790.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0067g03320.t01 (Vitis vinifera), 5'ss of exon 7
-------GGATGAACTTCCTGAGGACATAATTCAAGCTTCAAGTGCTTTGGAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttgatgcaactc--tgattttattcttttgttactagtcacaaagcatttatattttagatcttatcaccatctcaatggttggttctgaagatattaaaaaaaaacattaatattttctgattgtctttgttttgcag
          |||    || |||||  |||| | | |||||| ||||||||| |||||||||||||| ||||||||||||||||| ||  | ||||||||||  ||||   |    ||    ||  || ||    | |   | ||  | | | |     |   |||||| ||  |     ||||       |  | |  || ||                                          
GGTATGACAGTGATGAGCCAGAGGATGTAATACGAACTTCAACTGCTTTGGAGAATCTTCAATTGGATAGAAAAGCTCGGAATCTGACTACATCTTGGCGgtctgtttctctatccctaaacgacattttttaggtttcttttgttgctaggga-----aaagtagatcctagaaatggttcaagaaactctggtaactatgttc-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208243451|gb|GE040349.1|GE040349
EST:     GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGTATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGG
genomic: GAAAATCTTCAATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAG-ATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGG
EST: gi|193304802|gb|FK271713.1|FK271713
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|193376991|gb|FK340626.1|FK340626
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|208079074|gb|GD876998.1|GD876998
EST:     AATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
EST: gi|193320696|gb|FK286539.1|FK286539
EST:     AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCG                         ACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG
genomic: AATTGGACAGAAAAGCTCGGAATCTAACATCTTCTTGGCGgttcgttttg ... tgttttgcagACACGCTGGAGATGGTATCAATGAGGATGATGGCAGGGATCACGTGTAGGG