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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatagctgacattatttctctacaagttgtcttgtactactttattattttattttatatattgatgttcccggatcttcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacagGGCCGTTCCTTCATCTCAGGCATCTG

Basic information

species Glycine max
transcript GLYMA20G38790.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405233|gb|EV275047.1|EV275047
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATCT
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCT
EST: gi|151408547|gb|EV278355.1|EV278355
EST:     AAGGCATTCTTCCTCATCTGTTTGCTGGTGGCTTACCTCCACTTGGAAAG                         GGCCGTTCCTTCATCTCAG-CATCTG
genomic: AAGGCATTCTTCCTCATCTGTT-GCTGGTGGCTTACCTCCACTTGGAA-Ggtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: gi|192325538|gb|FK018434.1|FK018434
EST:     CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG                         GGCCGTTCCTTCATC
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
 tcttgat  putative branch site (score: 4)
                                         cctgttt  putative PPT
                  tagacatttttttaag  TA-rich tract