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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGGAAGATCATGTGATTGAGAAGGAACAAGCCCTACCTCCTGCATTGCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttcttctcgatccctaacctactttttctccatgtttcaagagtgcaatattcttagattctctcgtcgtgttgttacctgaatatataacgag...

Basic information

species Glycine max
transcript GLYMA20G38790.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186320|gb|HO036953.1|HO036953
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|208206870|gb|GE004663.1|GE004663
EST:     GATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|298168800|gb|HO009730.1|HO009730
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|207821309|gb|GD790094.1|GD790094
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCT
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCT
EST: gi|193338472|gb|FK303399.1|FK303399
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|151405233|gb|EV275047.1|EV275047
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|298191648|gb|HO039127.1|HO039127
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|13563206|gb|BG551426.1|BG551426
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|208192634|gb|GD989754.1|GD989754
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|298198893|gb|HO042256.1|HO042256
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|193340928|gb|FK307205.1|FK307205
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|151408547|gb|EV278355.1|EV278355
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|254329094|gb|GR833466.1|GR833466
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|192325538|gb|FK018434.1|FK018434
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|22522110|gb|BU080921.1|BU080921
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|298199357|gb|HO042720.1|HO042720
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCGGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
EST: gi|298184578|gb|HO029791.1|HO029791
EST:     GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAG                         GGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA
genomic: GCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttct ... cactgtgcagGGAGACTTCTTTCGGCGATGATATGTGAATACCTTGACTGGGCGCAGCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAGGAAGATCATGTGATTGAGAAGGAACAAGCCCTACCTCCTGCATTGCTTGGTAGCTGCAACGATCGAGCTAAACAGCTTCACGCTTCTCCTCCAGgttcttttcttctcgatccctaacctactttttctccatgtttcaagagtgcaatattcttagattctctcgtcgtgttgttacctgaatatataacgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC