1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagctgacattatttctctacaagttgtcttgtactactttattattttattttatatattgatgttcccggatcttcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacag
species | Glycine max |
transcript | GLYMA20G38790.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTTTCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG GGCCGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAATTGACTTTEST: gi|151405233|gb|EV275047.1|EV275047
genomic: AGG---CATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAATTGACTTT
EST: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG GGCCGTTCCTTCATCTEST: gi|151408547|gb|EV278355.1|EV278355
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCT
EST: AAGGCATTCTTCCTCATCTGTTTGCTGGTGGCTTACCTCCACTTGGAAAG GGCCGTTCCTTCATCTCAG-CATCTGEST: gi|192319101|gb|FK010637.1|FK010637
genomic: AAGGCATTCTTCCTCATCTGTT-GCTGGTGGCTTACCTCCACTTGGAA-Ggtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTG
EST: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAA GGCCGTTCCTTCATCTCAG-CATCTGGGTGGGTATTTCCTGTAATTGACTTEST: gi|192319102|gb|FK010638.1|FK010638
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTGG-TGGGTATTTCCTGTAATTGACTT
EST: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG GGCCGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAATTGACTTTEST: gi|192325538|gb|FK018434.1|FK018434
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATCTCAGGCATCTGGTGGGTATTTCCTGTAATTGACTTT
EST: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAG GGCCGTTCCTTCATC
genomic: CGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagct ... tttgttacagGGCCGTTCCTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCACCTCAGAAGCTGATCCTTTACCCAACTCCGAATCACGGAATCCCCGAAGGCATTCTTCCTCATCTGTTGCTGGTGGCTTACCTCCACTTGGAAGgtgcatagctgacattatttctctacaagttgtcttgtactactttattattttattttatatattgatgttcccggatcttcttgatttcatttttggtagacatttttttaagtaattcacctgtttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG